Descriptive statics SIV_farms
## Dataset dimensions: 100 rows x 186 columnsDescriptive statistics
Below you’ll find a per-variable summary and relevant plots for the
SIV_farms (df3) data set. Character variables are excluded
from this analysis.
Outcomes
IAV_positive
Summary statistics:
Variable: IAV_positive Class: logical FALSE 65 TRUE 35 Mode: FALSE Proportion of levels: FALSE 0.65, TRUE 0.35 NA count: 0
total_samples
Summary statistics:
Variable: total_samples Class: integer Min. 9.00 1st Qu. 19.00 Median 19.00 Mean 18.49 3rd Qu. 19.00 Max. 19.00 Variance: 2.475 Shapiro-Wilk p-value: 0.000000000000000001131 (not normal) NA count: 0
positive_pigs
Summary statistics:
Variable: positive_pigs Class: integer Min. 0.00 1st Qu. 0.00 Median 0.00 Mean 1.59 3rd Qu. 1.00 Max. 19.00 Variance: 14.06 Shapiro-Wilk p-value: 0.00000000000000004751 (not normal) NA count: 0
percent_positive_pigs
Summary statistics:
Variable: percent_positive_pigs Class: numeric Min. 0.000 1st Qu. 0.000 Median 0.000 Mean 8.485 3rd Qu. 5.263 Max. 100.000 Variance: 406.6 Shapiro-Wilk p-value: 0.00000000000000003892 (not normal) NA count: 0
min_ct
Summary statistics:
Variable: min_ct Class: numeric Min. 20.61 1st Qu. 31.24 Median 34.69 Mean 33.11 3rd Qu. 36.96 Max. 37.73 NA's 65 Variance: NA Shapiro-Wilk p-value: 0.00006768 (not normal) NA count: 65
max_ct
Summary statistics:
Variable: max_ct Class: numeric Min. 29.21 1st Qu. 34.68 Median 35.14 Mean 35.64 3rd Qu. 37.34 Max. 37.73 NA's 65 Variance: NA Shapiro-Wilk p-value: 0.0003468 (not normal) NA count: 65
mean_ct
Summary statistics:
Variable: mean_ct Class: numeric Min. 28.18 1st Qu. 33.68 Median 34.75 Mean 34.68 3rd Qu. 36.96 Max. 37.73 NA's 65 Variance: NA Shapiro-Wilk p-value: 0.003306 (not normal) NA count: 65
sd_ct
Summary statistics:
Variable: sd_ct Class: numeric Min. 0.3458 1st Qu. 0.4751 Median 1.1683 Mean 1.8308 3rd Qu. 2.8151 Max. 5.1829 NA's 82 Variance: NA Shapiro-Wilk p-value: 0.002632 (not normal) NA count: 82
season_sampling
Summary statistics:
Variable: season_sampling Class: factor winter 23 spring 32 summer 25 autumn 20 Mode: spring Proportion of levels: winter 0.23, spring 0.32, summer 0.25, autumn 0.20 Levels: winter, spring, summer, autumn NA count: 0
canton_factor
Summary statistics:
Variable: canton_factor Class: factor North-West 6 Berne + Solothurn 42 East & Zurich 19 Romandy 14 Lucerne 19 Mode: Berne + Solothurn Proportion of levels: North-West 0.06, Berne + Solothurn 0.42, East & Zurich 0.19, Romandy 0.14, Lucerne 0.19 Levels: North-West, Berne + Solothurn, East & Zurich, Romandy, Lucerne NA count: 0
herdsize
Summary statistics:
Variable: herdsize Class: integer Min. 25 1st Qu. 462 Median 720 Mean 843 3rd Qu. 1114 Max. 4183 Variance: 344813 Shapiro-Wilk p-value: 0.000000007035 (not normal) NA count: 0
production_type_factor
Summary statistics:
Variable: production_type_factor Class: factor 1 11 2 25 3 41 4 14 5 9 Mode: 3 Proportion of levels: 1 0.11, 2 0.25, 3 0.41, 4 0.14, 5 0.09 Levels: 1, 2, 3, 4, 5 NA count: 0
Farrowing_on_farm
Summary statistics:
Variable: Farrowing_on_farm Class: logical FALSE 12 TRUE 88 Mode: TRUE Proportion of levels: FALSE 0.12, TRUE 0.88 NA count: 0
Isemination_on_farm
Summary statistics:
Variable: Isemination_on_farm Class: logical FALSE 30 TRUE 70 Mode: TRUE Proportion of levels: FALSE 0.30, TRUE 0.70 NA count: 0
Gestation_on_farm
Summary statistics:
Variable: Gestation_on_farm Class: logical FALSE 30 TRUE 70 Mode: TRUE Proportion of levels: FALSE 0.30, TRUE 0.70 NA count: 0
Weaners_on_farm
Summary statistics:
Variable: Weaners_on_farm Class: logical FALSE 11 TRUE 89 Mode: TRUE Proportion of levels: FALSE 0.11, TRUE 0.89 NA count: 0
Fattening_on_farm
Summary statistics:
Variable: Fattening_on_farm Class: logical FALSE 37 TRUE 63 Mode: TRUE Proportion of levels: FALSE 0.37, TRUE 0.63 NA count: 0
respiratory_signs
Summary statistics:
Variable: respiratory_signs Class: logical FALSE 85 TRUE 15 Mode: FALSE Proportion of levels: FALSE 0.85, TRUE 0.15 NA count: 0
rectal_temperature_max
Summary statistics:
Variable: rectal_temperature_max Class: numeric Min. 39.20 1st Qu. 40.10 Median 40.30 Mean 40.40 3rd Qu. 40.65 Max. 41.80 NA's 1 Variance: NA Shapiro-Wilk p-value: 0.004161 (not normal) NA count: 1
rectal_temperature_avg
Summary statistics:
Variable: rectal_temperature_avg Class: numeric Min. 38.80 1st Qu. 39.50 Median 39.70 Mean 39.67 3rd Qu. 39.90 Max. 40.40 NA's 1 Variance: NA Shapiro-Wilk p-value: 0.02114 (not normal) NA count: 1
horses_closeby
Summary statistics:
Variable: horses_closeby Class: logical FALSE 92 TRUE 8 Mode: FALSE Proportion of levels: FALSE 0.92, TRUE 0.08 NA count: 0
dogs_closeby
Summary statistics:
Variable: dogs_closeby Class: logical FALSE 55 TRUE 45 Mode: FALSE Proportion of levels: FALSE 0.55, TRUE 0.45 NA count: 0
chicken_closeby
Summary statistics:
Variable: chicken_closeby Class: logical FALSE 67 TRUE 33 Mode: FALSE Proportion of levels: FALSE 0.67, TRUE 0.33 NA count: 0
turkey_closeby
Summary statistics:
Variable: turkey_closeby Class: logical FALSE 98 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.98, TRUE 0.02 NA count: 0
cattle_closeby
Summary statistics:
Variable: cattle_closeby Class: logical FALSE 49 TRUE 51 Mode: TRUE Proportion of levels: FALSE 0.49, TRUE 0.51 NA count: 0
cats_closeby
Summary statistics:
Variable: cats_closeby Class: logical FALSE 35 TRUE 65 Mode: TRUE Proportion of levels: FALSE 0.35, TRUE 0.65 NA count: 0
proximity_to_other_pig_herd
Summary statistics:
Variable: proximity_to_other_pig_herd Class: logical FALSE 33 TRUE 67 Mode: TRUE Proportion of levels: FALSE 0.33, TRUE 0.67 NA count: 0
proximity_to_other_poultry_herd
Summary statistics:
Variable: proximity_to_other_poultry_herd Class: logical FALSE 23 TRUE 77 Mode: TRUE Proportion of levels: FALSE 0.23, TRUE 0.77 NA count: 0
number_suckling_piglets
Summary statistics:
Variable: number_suckling_piglets Class: integer Min. 20.0 1st Qu. 150.0 Median 242.5 Mean 275.6 3rd Qu. 350.0 Max. 1400.0 NA's 12 Variance: NA Shapiro-Wilk p-value: 0.000000003806 (not normal) NA count: 12
number_weaners
Summary statistics:
Variable: number_weaners Class: integer Min. 16.0 1st Qu. 200.0 Median 300.0 Mean 368.5 3rd Qu. 500.0 Max. 2200.0 NA's 11 Variance: NA Shapiro-Wilk p-value: 0.0000000001275 (not normal) NA count: 11
number_fattening_pigs
Summary statistics:
Variable: number_fattening_pigs Class: integer Min. 1 1st Qu. 20 Median 184 Mean 283 3rd Qu. 470 Max. 1400 NA's 37 Variance: NA Shapiro-Wilk p-value: 0.000001303 (not normal) NA count: 37
number_young_sows
Summary statistics:
Variable: number_young_sows Class: integer Min. 2.0 1st Qu. 7.0 Median 10.0 Mean 22.4 3rd Qu. 20.0 Max. 350.0 NA's 28 Variance: NA Shapiro-Wilk p-value: 0.0000000000000004535 (not normal) NA count: 28
number_old_sows
Summary statistics:
Variable: number_old_sows Class: integer Min. 5.0 1st Qu. 40.0 Median 75.0 Mean 87.4 3rd Qu. 116.2 Max. 530.0 NA's 12 Variance: NA Shapiro-Wilk p-value: 0.0000000003521 (not normal) NA count: 12
number_boars
Summary statistics:
Variable: number_boars Class: integer Min. 1.0 1st Qu. 1.0 Median 2.0 Mean 1.8 3rd Qu. 2.0 Max. 4.0 NA's 30 Variance: NA Shapiro-Wilk p-value: 0.00000002447 (not normal) NA count: 30
number_of_origins
Summary statistics:
Variable: number_of_origins Class: integer Min. 1.000 1st Qu. 1.000 Median 2.000 Mean 1.667 3rd Qu. 2.000 Max. 4.000 NA's 13 Variance: NA Shapiro-Wilk p-value: 0.00000000009154 (not normal) NA count: 13
quarantine_concept
Summary statistics:
Variable: quarantine_concept Class: logical FALSE 34 TRUE 66 Mode: TRUE Proportion of levels: FALSE 0.34, TRUE 0.66 NA count: 0
quarantine_time
Summary statistics:
Variable: quarantine_time Class: factor 16 12 4 10 3 10 6 6 5 4 20 3 2 1 other 12 NA's 42 Mode: 16 Proportion of levels: 16 0.21, 4 0.17, 3 0.17, 6 0.10, 5 0.07, 20 0.05, 2 0.02, other 0.21 Levels: 16, 4, 3, 6, 5, 20, 2, other NA count: 42
quarantine_in_herd_contact
Summary statistics:
Variable: quarantine_in_herd_contact Class: logical FALSE 62 TRUE 38 Mode: FALSE Proportion of levels: FALSE 0.62, TRUE 0.38 NA count: 0
herds_of_origin_respiratory_symptoms
Summary statistics:
Variable: herds_of_origin_respiratory_symptoms Class: logical FALSE 96 TRUE 4 Mode: FALSE Proportion of levels: FALSE 0.96, TRUE 0.04 NA count: 0
herds_of_origin_influenza_diagnosis
Summary statistics:
Variable: herds_of_origin_influenza_diagnosis Class: logical FALSE 99 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.99, TRUE 0.01 NA count: 0
production_cycle
Summary statistics:
Variable: production_cycle Class: factor 1 15 2 16 3 47 other 22 Mode: 3 Proportion of levels: 1 0.15, 2 0.16, 3 0.47, other 0.22 Levels: 1, 2, 3, other NA count: 0
mode_stable_occupation_ai_centre
Summary statistics:
Variable: mode_stable_occupation_ai_centre Class: logical FALSE 13 TRUE 55 Mode: TRUE Proportion of levels: FALSE 0.19, TRUE 0.81 NA count: 32
mode_stable_occupation_gestation_stable
Summary statistics:
Variable: mode_stable_occupation_gestation_stable Class: logical FALSE 10 TRUE 64 Mode: TRUE Proportion of levels: FALSE 0.14, TRUE 0.86 NA count: 26
mode_stable_occupation_farrowing_stable
Summary statistics:
Variable: mode_stable_occupation_farrowing_stable Class: logical FALSE 24 TRUE 65 Mode: TRUE Proportion of levels: FALSE 0.27, TRUE 0.73 NA count: 11
cross_fostering_farrowing_stable
Summary statistics:
Variable: cross_fostering_farrowing_stable Class: factor 1 19 2 48 3 22 NA's 11 Mode: 2 Proportion of levels: 1 0.21, 2 0.54, 3 0.25 Levels: 1, 2, 3 NA count: 11
mode_stable_occupation_weaner_stable
Summary statistics:
Variable: mode_stable_occupation_weaner_stable Class: logical FALSE 43 TRUE 48 Mode: TRUE Proportion of levels: FALSE 0.47, TRUE 0.53 NA count: 9
mode_stable_occupation_fattening_stable
Summary statistics:
Variable: mode_stable_occupation_fattening_stable Class: logical FALSE 54 TRUE 9 Mode: FALSE Proportion of levels: FALSE 0.86, TRUE 0.14 NA count: 37
passing_through_other_age_group
Summary statistics:
Variable: passing_through_other_age_group Class: logical FALSE 60 TRUE 40 Mode: FALSE Proportion of levels: FALSE 0.60, TRUE 0.40 NA count: 0
outside_area
Summary statistics:
Variable: outside_area Class: logical FALSE 25 TRUE 75 Mode: TRUE Proportion of levels: FALSE 0.25, TRUE 0.75 NA count: 0
outside_area_ai_centre
Summary statistics:
Variable: outside_area_ai_centre Class: logical FALSE 71 TRUE 29 Mode: FALSE Proportion of levels: FALSE 0.71, TRUE 0.29 NA count: 0
outside_area_gestation_stable
Summary statistics:
Variable: outside_area_gestation_stable Class: logical FALSE 43 TRUE 57 Mode: TRUE Proportion of levels: FALSE 0.43, TRUE 0.57 NA count: 0
outside_area_farrowing_stable
Summary statistics:
Variable: outside_area_farrowing_stable Class: logical FALSE 94 TRUE 6 Mode: FALSE Proportion of levels: FALSE 0.94, TRUE 0.06 NA count: 0
outside_area_weaner_stable
Summary statistics:
Variable: outside_area_weaner_stable Class: logical FALSE 90 TRUE 10 Mode: FALSE Proportion of levels: FALSE 0.90, TRUE 0.10 NA count: 0
outside_area_fattening_stable
Summary statistics:
Variable: outside_area_fattening_stable Class: logical FALSE 63 TRUE 37 Mode: FALSE Proportion of levels: FALSE 0.63, TRUE 0.37 NA count: 0
outside_area_contact_poultry
Summary statistics:
Variable: outside_area_contact_poultry Class: logical FALSE 93 TRUE 7 Mode: FALSE Proportion of levels: FALSE 0.93, TRUE 0.07 NA count: 0
outside_area_contact_wild_birds
Summary statistics:
Variable: outside_area_contact_wild_birds Class: logical FALSE 31 TRUE 69 Mode: TRUE Proportion of levels: FALSE 0.31, TRUE 0.69 NA count: 0
outside_area_contact_wild_boars
Summary statistics:
Variable: outside_area_contact_wild_boars Class: logical FALSE 45 TRUE 55 Mode: TRUE Proportion of levels: FALSE 0.45, TRUE 0.55 NA count: 0
contact_bird_in_stable
Summary statistics:
Variable: contact_bird_in_stable Class: logical FALSE 61 TRUE 39 Mode: FALSE Proportion of levels: FALSE 0.61, TRUE 0.39 NA count: 0
cleaning_ai_centre
Summary statistics:
Variable: cleaning_ai_centre Class: factor 1 18 2 40 3 11 NA's 31 Mode: 2 Proportion of levels: 1 0.26, 2 0.58, 3 0.16 Levels: 1, 2, 3 NA count: 31
cleaning_gestation_stable
Summary statistics:
Variable: cleaning_gestation_stable Class: logical FALSE 26 TRUE 49 Mode: TRUE Proportion of levels: FALSE 0.35, TRUE 0.65 NA count: 25
cleaning_farrowing_stable
Summary statistics:
Variable: cleaning_farrowing_stable Class: logical FALSE 4 TRUE 85 Mode: TRUE Proportion of levels: FALSE 0.04, TRUE 0.96 NA count: 11
cleaning_weaner_stable
Summary statistics:
Variable: cleaning_weaner_stable Class: logical FALSE 11 TRUE 79 Mode: TRUE Proportion of levels: FALSE 0.12, TRUE 0.88 NA count: 10
cleaning_fattening_stable
Summary statistics:
Variable: cleaning_fattening_stable Class: factor 1 13 2 36 3 14 NA's 37 Mode: 2 Proportion of levels: 1 0.21, 2 0.57, 3 0.22 Levels: 1, 2, 3 NA count: 37
cleaning_quarantine
Summary statistics:
Variable: cleaning_quarantine Class: factor 1 9 2 7 3 8 NA's 76 Mode: 1 Proportion of levels: 1 0.38, 2 0.29, 3 0.33 Levels: 1, 2, 3 NA count: 76
disinfection_ai_centre
Summary statistics:
Variable: disinfection_ai_centre Class: logical FALSE 54 TRUE 15 Mode: FALSE Proportion of levels: FALSE 0.78, TRUE 0.22 NA count: 31
disinfection_gestation_stable
Summary statistics:
Variable: disinfection_gestation_stable Class: logical FALSE 62 TRUE 13 Mode: FALSE Proportion of levels: FALSE 0.83, TRUE 0.17 NA count: 25
disinfection_farrowing_stable
Summary statistics:
Variable: disinfection_farrowing_stable Class: factor 1 47 2 9 3 34 NA's 10 Mode: 1 Proportion of levels: 1 0.52, 2 0.10, 3 0.38 Levels: 1, 2, 3 NA count: 10
disinfection_weaner_stable
Summary statistics:
Variable: disinfection_weaner_stable Class: factor 1 52 2 10 3 28 NA's 10 Mode: 1 Proportion of levels: 1 0.58, 2 0.11, 3 0.31 Levels: 1, 2, 3 NA count: 10
disinfection_fattening_stable
Summary statistics:
Variable: disinfection_fattening_stable Class: logical FALSE 48 TRUE 15 Mode: FALSE Proportion of levels: FALSE 0.76, TRUE 0.24 NA count: 37
disinfection_quarantine
Summary statistics:
Variable: disinfection_quarantine Class: logical FALSE 18 TRUE 6 Mode: FALSE Proportion of levels: FALSE 0.75, TRUE 0.25 NA count: 76
drying_ai_centre
Summary statistics:
Variable: drying_ai_centre Class: factor 1 28 2 29 3 12 NA's 31 Mode: 2 Proportion of levels: 1 0.41, 2 0.42, 3 0.17 Levels: 1, 2, 3 NA count: 31
drying_gestation_stable
Summary statistics:
Variable: drying_gestation_stable Class: logical FALSE 46 TRUE 29 Mode: FALSE Proportion of levels: FALSE 0.61, TRUE 0.39 NA count: 25
drying_farrowing_stable
Summary statistics:
Variable: drying_farrowing_stable Class: logical FALSE 12 TRUE 77 Mode: TRUE Proportion of levels: FALSE 0.13, TRUE 0.87 NA count: 11
drying_weaner_stable
Summary statistics:
Variable: drying_weaner_stable Class: logical FALSE 9 TRUE 81 Mode: TRUE Proportion of levels: FALSE 0.10, TRUE 0.90 NA count: 10
drying_fattening_stable
Summary statistics:
Variable: drying_fattening_stable Class: factor 1 22 2 27 3 13 NA's 38 Mode: 2 Proportion of levels: 1 0.35, 2 0.44, 3 0.21 Levels: 1, 2, 3 NA count: 38
drying_quarantine
Summary statistics:
Variable: drying_quarantine Class: logical FALSE 13 TRUE 11 Mode: FALSE Proportion of levels: FALSE 0.54, TRUE 0.46 NA count: 76
cleaning_disinfection_transport_vehicle
Summary statistics:
Variable: cleaning_disinfection_transport_vehicle Class: logical FALSE 4 TRUE 77 Mode: TRUE Proportion of levels: FALSE 0.05, TRUE 0.95 NA count: 19
cleaning_shipment_area
Summary statistics:
Variable: cleaning_shipment_area Class: logical FALSE 61 TRUE 35 Mode: FALSE Proportion of levels: FALSE 0.64, TRUE 0.36 NA count: 4
caretaker_number
Summary statistics:
Variable: caretaker_number Class: integer Min. 1.00 1st Qu. 2.00 Median 3.00 Mean 2.85 3rd Qu. 3.00 Max. 16.00 Variance: 2.876 Shapiro-Wilk p-value: 0.000000000000004927 (not normal) NA count: 0
caretaker_ppe_stable
Summary statistics:
Variable: caretaker_ppe_stable Class: logical FALSE 35 TRUE 65 Mode: TRUE Proportion of levels: FALSE 0.35, TRUE 0.65 NA count: 0
caretaker_ppe_washing_interval
Summary statistics:
Variable: caretaker_ppe_washing_interval Class: logical FALSE 12 TRUE 88 Mode: TRUE Proportion of levels: FALSE 0.12, TRUE 0.88 NA count: 0
caretaker_ppe_per_unit
Summary statistics:
Variable: caretaker_ppe_per_unit Class: logical FALSE 94 TRUE 6 Mode: FALSE Proportion of levels: FALSE 0.94, TRUE 0.06 NA count: 0
caretaker_per_unit
Summary statistics:
Variable: caretaker_per_unit Class: logical FALSE 79 TRUE 21 Mode: FALSE Proportion of levels: FALSE 0.79, TRUE 0.21 NA count: 0
caretaker_work_flow_hygiene_between_units
Summary statistics:
Variable: caretaker_work_flow_hygiene_between_units Class: logical FALSE 31 TRUE 69 Mode: TRUE Proportion of levels: FALSE 0.31, TRUE 0.69 NA count: 0
caretaker_entry_ppe_only
Summary statistics:
Variable: caretaker_entry_ppe_only Class: logical FALSE 49 TRUE 51 Mode: TRUE Proportion of levels: FALSE 0.49, TRUE 0.51 NA count: 0
caretaker_disease_management
Summary statistics:
Variable: caretaker_disease_management Class: logical FALSE 87 TRUE 12 Mode: FALSE Proportion of levels: FALSE 0.88, TRUE 0.12 NA count: 1
caretaker_hands_washed_before_entry
Summary statistics:
Variable: caretaker_hands_washed_before_entry Class: logical FALSE 55 TRUE 45 Mode: FALSE Proportion of levels: FALSE 0.55, TRUE 0.45 NA count: 0
caretaker_boot_disinfection
Summary statistics:
Variable: caretaker_boot_disinfection Class: logical FALSE 78 TRUE 22 Mode: FALSE Proportion of levels: FALSE 0.78, TRUE 0.22 NA count: 0
caretaker_contact_other_pigs
Summary statistics:
Variable: caretaker_contact_other_pigs Class: logical FALSE 78 TRUE 7 Mode: FALSE Proportion of levels: FALSE 0.92, TRUE 0.08 NA count: 15
caretaker_contact_poultry
Summary statistics:
Variable: caretaker_contact_poultry Class: logical FALSE 71 TRUE 8 Mode: FALSE Proportion of levels: FALSE 0.90, TRUE 0.10 NA count: 21
visitors_cumulative_contact_hours
Summary statistics:
Variable: visitors_cumulative_contact_hours Class: numeric Min. 1.00 1st Qu. 3.00 Median 6.00 Mean 7.03 3rd Qu. 9.00 Max. 22.00 Variance: 24.09 Shapiro-Wilk p-value: 0.000001059 (not normal) NA count: 0
visitors_list
Summary statistics:
Variable: visitors_list Class: logical FALSE 3 TRUE 97 Mode: TRUE Proportion of levels: FALSE 0.03, TRUE 0.97 NA count: 0
ppe_visitors
Summary statistics:
Variable: ppe_visitors Class: logical FALSE 5 TRUE 95 Mode: TRUE Proportion of levels: FALSE 0.05, TRUE 0.95 NA count: 0
visitors_hands_washed_before_entry
Summary statistics:
Variable: visitors_hands_washed_before_entry Class: logical FALSE 50 TRUE 50 Mode: FALSE Proportion of levels: FALSE 0.50, TRUE 0.50 NA count: 0
visitors_disease_management
Summary statistics:
Variable: visitors_disease_management Class: logical FALSE 20 TRUE 5 Mode: FALSE Proportion of levels: FALSE 0.80, TRUE 0.20 NA count: 75
visitors_contact_other_pigs
Summary statistics:
Variable: visitors_contact_other_pigs Class: logical FALSE 9 TRUE 67 Mode: TRUE Proportion of levels: FALSE 0.12, TRUE 0.88 NA count: 24
visitors_respiratory_symptoms
Summary statistics:
Variable: visitors_respiratory_symptoms Class: logical FALSE 98 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.98, TRUE 0.02 NA count: 0
return_to_service_rate
Summary statistics:
Variable: return_to_service_rate Class: logical FALSE 14 TRUE 54 Mode: TRUE Proportion of levels: FALSE 0.21, TRUE 0.79 NA count: 32
farrowing_rate
Summary statistics:
Variable: farrowing_rate Class: logical FALSE 19 TRUE 62 Mode: TRUE Proportion of levels: FALSE 0.23, TRUE 0.77 NA count: 19
piglets_per_sow_year
Summary statistics:
Variable: piglets_per_sow_year Class: logical FALSE 8 TRUE 74 Mode: TRUE Proportion of levels: FALSE 0.10, TRUE 0.90 NA count: 18
abortions_per_sow_year
Summary statistics:
Variable: abortions_per_sow_year Class: logical FALSE 1 TRUE 81 Mode: TRUE Proportion of levels: FALSE 0.01, TRUE 0.99 NA count: 18
piglet_mortality
Summary statistics:
Variable: piglet_mortality Class: logical FALSE 15 TRUE 66 Mode: TRUE Proportion of levels: FALSE 0.19, TRUE 0.81 NA count: 19
feed_conversion_rate_fattening_pigs
Summary statistics:
Variable: feed_conversion_rate_fattening_pigs Class: logical FALSE 3 TRUE 11 Mode: TRUE Proportion of levels: FALSE 0.21, TRUE 0.79 NA count: 86
respiratory_history_swine
Summary statistics:
Variable: respiratory_history_swine Class: factor 1 54 2 20 3 5 NA's 21 Mode: 1 Proportion of levels: 1 0.68, 2 0.25, 3 0.06 Levels: 1, 2, 3 NA count: 21
time_respiratory_disease
Summary statistics:
Variable: time_respiratory_disease Class: logical FALSE 6 TRUE 52 Mode: TRUE Proportion of levels: FALSE 0.10, TRUE 0.90 NA count: 42
frequency_respi_outbreak
Summary statistics:
Variable: frequency_respi_outbreak Class: factor never 36 few pigs affected no outbreak 19 once 23 1x/year 11 2x/year 7 3x or more per year 4 Mode: never Proportion of levels: never 0.36, few pigs affected no outbreak 0.19, once 0.23, 1x/year 0.11, 2x/year 0.07, 3x or more per year 0.04 Levels: never, few pigs affected no outbreak, once, 1x/year, 2x/year, 3x or more per year NA count: 0
outbreak_since_examination
Summary statistics:
Variable: outbreak_since_examination Class: logical FALSE 95 TRUE 5 Mode: FALSE Proportion of levels: FALSE 0.95, TRUE 0.05 NA count: 0
suckling_piglets_diseased
Summary statistics:
Variable: suckling_piglets_diseased Class: logical FALSE 94 TRUE 6 Mode: FALSE Proportion of levels: FALSE 0.94, TRUE 0.06 NA count: 0
weaners_diseased
Summary statistics:
Variable: weaners_diseased Class: logical FALSE 55 TRUE 45 Mode: FALSE Proportion of levels: FALSE 0.55, TRUE 0.45 NA count: 0
fattening_pigs_diseased
Summary statistics:
Variable: fattening_pigs_diseased Class: logical FALSE 73 TRUE 27 Mode: FALSE Proportion of levels: FALSE 0.73, TRUE 0.27 NA count: 0
young_sows_diseased
Summary statistics:
Variable: young_sows_diseased Class: logical FALSE 97 TRUE 3 Mode: FALSE Proportion of levels: FALSE 0.97, TRUE 0.03 NA count: 0
old_sows_diseased
Summary statistics:
Variable: old_sows_diseased Class: logical FALSE 97 TRUE 3 Mode: FALSE Proportion of levels: FALSE 0.97, TRUE 0.03 NA count: 0
boars_diseased
Summary statistics:
Variable: boars_diseased Class: logical FALSE 99 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.99, TRUE 0.01 NA count: 0
symptom_swine_sneezing
Summary statistics:
Variable: symptom_swine_sneezing Class: logical FALSE 80 TRUE 20 Mode: FALSE Proportion of levels: FALSE 0.80, TRUE 0.20 NA count: 0
symptom_swine_coughing
Summary statistics:
Variable: symptom_swine_coughing Class: logical FALSE 37 TRUE 63 Mode: TRUE Proportion of levels: FALSE 0.37, TRUE 0.63 NA count: 0
symptom_swine_nasal_discharge
Summary statistics:
Variable: symptom_swine_nasal_discharge Class: logical FALSE 94 TRUE 6 Mode: FALSE Proportion of levels: FALSE 0.94, TRUE 0.06 NA count: 0
symptom_swine_fever
Summary statistics:
Variable: symptom_swine_fever Class: logical FALSE 85 TRUE 15 Mode: FALSE Proportion of levels: FALSE 0.85, TRUE 0.15 NA count: 0
symptom_swine_feed_intake_red
Summary statistics:
Variable: symptom_swine_feed_intake_red Class: logical FALSE 66 TRUE 34 Mode: FALSE Proportion of levels: FALSE 0.66, TRUE 0.34 NA count: 0
symptom_swine_apathy
Summary statistics:
Variable: symptom_swine_apathy Class: logical FALSE 74 TRUE 26 Mode: FALSE Proportion of levels: FALSE 0.74, TRUE 0.26 NA count: 0
symptom_swine_dyspnoea
Summary statistics:
Variable: symptom_swine_dyspnoea Class: logical FALSE 87 TRUE 13 Mode: FALSE Proportion of levels: FALSE 0.87, TRUE 0.13 NA count: 0
vet_consultation
Summary statistics:
Variable: vet_consultation Class: logical FALSE 79 TRUE 21 Mode: FALSE Proportion of levels: FALSE 0.79, TRUE 0.21 NA count: 0
influenza_diagnosis
Summary statistics:
Variable: influenza_diagnosis Class: logical FALSE 96 TRUE 4 Mode: FALSE Proportion of levels: FALSE 0.96, TRUE 0.04 NA count: 0
influenza_vaccination
Summary statistics:
Variable: influenza_vaccination Class: logical FALSE 98 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.98, TRUE 0.02 NA count: 0
respiratory_history_human
Summary statistics:
Variable: respiratory_history_human Class: logical FALSE 88 TRUE 12 Mode: FALSE Proportion of levels: FALSE 0.88, TRUE 0.12 NA count: 0
respiratory_history_contact_person
Summary statistics:
Variable: respiratory_history_contact_person Class: logical FALSE 94 TRUE 6 Mode: FALSE Proportion of levels: FALSE 0.94, TRUE 0.06 NA count: 0
symptom_human_sneezing
Summary statistics:
Variable: symptom_human_sneezing Class: logical FALSE 88 TRUE 12 Mode: FALSE Proportion of levels: FALSE 0.88, TRUE 0.12 NA count: 0
symptom_human_coughing
Summary statistics:
Variable: symptom_human_coughing Class: logical FALSE 91 TRUE 9 Mode: FALSE Proportion of levels: FALSE 0.91, TRUE 0.09 NA count: 0
symptom_human_bronchitis
Summary statistics:
Variable: symptom_human_bronchitis Class: logical FALSE 99 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.99, TRUE 0.01 NA count: 0
symptom_human_pneumonia
Summary statistics:
Variable: symptom_human_pneumonia Class: logical FALSE 99 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.99, TRUE 0.01 NA count: 0
symptom_human_fever
Summary statistics:
Variable: symptom_human_fever Class: logical FALSE 96 TRUE 4 Mode: FALSE Proportion of levels: FALSE 0.96, TRUE 0.04 NA count: 0
symptom_human_headache
Summary statistics:
Variable: symptom_human_headache Class: logical FALSE 96 TRUE 4 Mode: FALSE Proportion of levels: FALSE 0.96, TRUE 0.04 NA count: 0
symptom_human_myalgia
Summary statistics:
Variable: symptom_human_myalgia Class: logical FALSE 97 TRUE 3 Mode: FALSE Proportion of levels: FALSE 0.97, TRUE 0.03 NA count: 0
symptom_severity
Summary statistics:
Variable: symptom_severity Class: logical FALSE 8 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.80, TRUE 0.20 NA count: 90
physician_consultation
Summary statistics:
Variable: physician_consultation Class: logical FALSE 98 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.98, TRUE 0.02 NA count: 0
flu_vaccination
Summary statistics:
Variable: flu_vaccination Class: logical FALSE 93 TRUE 7 Mode: FALSE Proportion of levels: FALSE 0.93, TRUE 0.07 NA count: 0
flu_vaccination_contacts
Summary statistics:
Variable: flu_vaccination_contacts Class: logical FALSE 88 TRUE 12 Mode: FALSE Proportion of levels: FALSE 0.88, TRUE 0.12 NA count: 0
chronic_disease_condition
Summary statistics:
Variable: chronic_disease_condition Class: logical FALSE 83 TRUE 17 Mode: FALSE Proportion of levels: FALSE 0.83, TRUE 0.17 NA count: 0
smoker
Summary statistics:
Variable: smoker Class: logical FALSE 73 TRUE 27 Mode: FALSE Proportion of levels: FALSE 0.73, TRUE 0.27 NA count: 0
Age_weeks_factor
Summary statistics:
Variable: Age_weeks_factor Class: factor weaners_4–5 55 weaners_6–7 17 weaners_8–9 4 weaners_10–12 12 weaners_mixed_ages 12 Mode: weaners_4–5 Proportion of levels: weaners_4–5 0.55, weaners_6–7 0.17, weaners_8–9 0.04, weaners_10–12 0.12, weaners_mixed_ages 0.12 Levels: weaners_4–5, weaners_6–7, weaners_8–9, weaners_10–12, weaners_mixed_ages NA count: 0
separation_quarantine_area
Summary statistics:
Variable: separation_quarantine_area Class: factor 1 8 2 14 3 76 NA's 2 Mode: 3 Proportion of levels: 1 0.08, 2 0.14, 3 0.78 Levels: 1, 2, 3 NA count: 2
bird_nests
Summary statistics:
Variable: bird_nests Class: logical FALSE 79 TRUE 21 Mode: FALSE Proportion of levels: FALSE 0.79, TRUE 0.21 NA count: 0
farrowing_piglets_reduced_general_wellbeing
Summary statistics:
Variable: farrowing_piglets_reduced_general_wellbeing Class: logical FALSE 84 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.99, TRUE 0.01 NA count: 15
farrowing_piglets_sneezing
Summary statistics:
Variable: farrowing_piglets_sneezing Class: numeric Min. 0.000 1st Qu. 0.000 Median 0.000 Mean 4.647 3rd Qu. 8.000 Max. 33.000 NA's 15 Variance: NA Shapiro-Wilk p-value: 0.0000000000008049 (not normal) NA count: 15
farrowing_piglets_coughing
Summary statistics:
Variable: farrowing_piglets_coughing Class: numeric Min. 0.0000 1st Qu. 0.0000 Median 0.0000 Mean 0.8353 3rd Qu. 0.0000 Max. 17.0000 NA's 15 Variance: NA Shapiro-Wilk p-value: 0.000000000000000003459 (not normal) NA count: 15
farrowing_room_temperature
Summary statistics:
Variable: farrowing_room_temperature Class: numeric Min. 12.80 1st Qu. 17.65 Median 19.30 Mean 19.75 3rd Qu. 21.43 Max. 30.20 NA's 28 Variance: NA Shapiro-Wilk p-value: 0.1633 (normal) NA count: 28
farrowing_nest_temperature_ok
Summary statistics:
Variable: farrowing_nest_temperature_ok Class: logical FALSE 14 TRUE 65 Mode: TRUE Proportion of levels: FALSE 0.18, TRUE 0.82 NA count: 21
farrowing_airflow
Summary statistics:
Variable: farrowing_airflow Class: numeric Min. 0.0000 1st Qu. 0.1000 Median 0.2000 Mean 0.1988 3rd Qu. 0.2050 Max. 1.0000 NA's 32 Variance: NA Shapiro-Wilk p-value: 0.00000002934 (not normal) NA count: 32
farrowing_air_quality
Summary statistics:
Variable: farrowing_air_quality Class: factor 1 14 2 61 3 11 NA's 14 Mode: 2 Proportion of levels: 1 0.16, 2 0.71, 3 0.13 Levels: 1, 2, 3 NA count: 14
farrowing_airspace_with_other_agegroup
Summary statistics:
Variable: farrowing_airspace_with_other_agegroup Class: factor 1 30 2 43 3 12 NA's 15 Mode: 2 Proportion of levels: 1 0.35, 2 0.51, 3 0.14 Levels: 1, 2, 3 NA count: 15
ai_sows_room_temperature
Summary statistics:
Variable: ai_sows_room_temperature Class: numeric Min. 8.70 1st Qu. 15.05 Median 18.00 Mean 18.53 3rd Qu. 21.02 Max. 30.40 NA's 54 Variance: NA Shapiro-Wilk p-value: 0.6843 (normal) NA count: 54
ai_sows_airflow
Summary statistics:
Variable: ai_sows_airflow Class: numeric Min. 0.0200 1st Qu. 0.1175 Median 0.2000 Mean 0.2211 3rd Qu. 0.3000 Max. 0.5000 NA's 56 Variance: NA Shapiro-Wilk p-value: 0.01042 (not normal) NA count: 56
ai_sows_air_quality
Summary statistics:
Variable: ai_sows_air_quality Class: factor 1 10 2 39 3 9 NA's 42 Mode: 2 Proportion of levels: 1 0.17, 2 0.67, 3 0.16 Levels: 1, 2, 3 NA count: 42
ai_airspace_with_other_agegroup
Summary statistics:
Variable: ai_airspace_with_other_agegroup Class: factor 1 7 2 25 3 25 NA's 43 Mode: 2 Proportion of levels: 1 0.12, 2 0.44, 3 0.44 Levels: 1, 2, 3 NA count: 43
gestation_sows_qm_per_animal
Summary statistics:
Variable: gestation_sows_qm_per_animal Class: numeric Min. 1.970 1st Qu. 2.500 Median 3.210 Mean 3.701 3rd Qu. 4.440 Max. 8.870 NA's 27 Variance: NA Shapiro-Wilk p-value: 0.0000005447 (not normal) NA count: 27
gestation_sows_animals_per_water_source
Summary statistics:
Variable: gestation_sows_animals_per_water_source Class: numeric Min. 0.330 1st Qu. 6.150 Median 8.400 Mean 9.368 3rd Qu. 12.000 Max. 45.000 NA's 27 Variance: NA Shapiro-Wilk p-value: 0.0000000104 (not normal) NA count: 27
gestation_sows_room_temperature
Summary statistics:
Variable: gestation_sows_room_temperature Class: numeric Min. 4.80 1st Qu. 14.10 Median 18.30 Mean 18.13 3rd Qu. 20.70 Max. 32.40 NA's 39 Variance: NA Shapiro-Wilk p-value: 0.464 (normal) NA count: 39
gestation_sows_airflow
Summary statistics:
Variable: gestation_sows_airflow Class: numeric Min. 0.0000 1st Qu. 0.1300 Median 0.2000 Mean 0.2692 3rd Qu. 0.3000 Max. 1.5000 NA's 41 Variance: NA Shapiro-Wilk p-value: 0.0000000001037 (not normal) NA count: 41
gestation_sows_air_quality
Summary statistics:
Variable: gestation_sows_air_quality Class: factor 1 24 2 43 3 5 NA's 28 Mode: 2 Proportion of levels: 1 0.33, 2 0.60, 3 0.07 Levels: 1, 2, 3 NA count: 28
gestation_sows_airspace_with_other_agegroup
Summary statistics:
Variable: gestation_sows_airspace_with_other_agegroup Class: factor 1 21 2 28 3 23 NA's 28 Mode: 2 Proportion of levels: 1 0.29, 2 0.39, 3 0.32 Levels: 1, 2, 3 NA count: 28
weaners_reduced_general_wellbeing
Summary statistics:
Variable: weaners_reduced_general_wellbeing Class: logical FALSE 93 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.99, TRUE 0.01 NA count: 6
weaners_sneezing
Summary statistics:
Variable: weaners_sneezing Class: numeric Min. 0.000 1st Qu. 0.500 Median 3.185 Mean 5.996 3rd Qu. 7.825 Max. 53.300 NA's 6 Variance: NA Shapiro-Wilk p-value: 0.0000000000008523 (not normal) NA count: 6
weaners_coughing
Summary statistics:
Variable: weaners_coughing Class: numeric Min. 0.0000 1st Qu. 0.0000 Median 0.0000 Mean 0.8978 3rd Qu. 0.8350 Max. 7.6000 NA's 6 Variance: NA Shapiro-Wilk p-value: 0.00000000000001055 (not normal) NA count: 6
weaners_discharge
Summary statistics:
Variable: weaners_discharge Class: logical FALSE 91 TRUE 3 Mode: FALSE Proportion of levels: FALSE 0.97, TRUE 0.03 NA count: 6
weaners_qm_per_animal
Summary statistics:
Variable: weaners_qm_per_animal Class: numeric Min. 0.1800 1st Qu. 0.3100 Median 0.3700 Mean 0.4066 3rd Qu. 0.4400 Max. 1.2300 NA's 6 Variance: NA Shapiro-Wilk p-value: 0.0000000008641 (not normal) NA count: 6
weaners_animals_per_feeding_site_factor
Summary statistics:
Variable: weaners_animals_per_feeding_site_factor Class: factor <20 27 <30 21 <40 21 >40 17 trough 8 NA's 6 Mode: <20 Proportion of levels: <20 0.29, <30 0.22, <40 0.22, >40 0.18, trough 0.09 Levels: <20, <30, <40, >40, trough NA count: 6
weaners_animals_per_water_source
Summary statistics:
Variable: weaners_animals_per_water_source Class: numeric Min. 6.000 1st Qu. 9.762 Median 11.850 Mean 14.886 3rd Qu. 18.375 Max. 50.000 NA's 6 Variance: NA Shapiro-Wilk p-value: 0.0000000001342 (not normal) NA count: 6
weaners_room_temperature
Summary statistics:
Variable: weaners_room_temperature Class: numeric Min. 7.50 1st Qu. 16.80 Median 19.55 Mean 19.70 3rd Qu. 22.60 Max. 29.40 NA's 20 Variance: NA Shapiro-Wilk p-value: 0.5194 (normal) NA count: 20
weaners_airflow
Summary statistics:
Variable: weaners_airflow Class: numeric Min. 0.0000 1st Qu. 0.1000 Median 0.1700 Mean 0.2074 3rd Qu. 0.2500 Max. 0.7000 NA's 23 Variance: NA Shapiro-Wilk p-value: 0.0000003241 (not normal) NA count: 23
weaners_air_quality
Summary statistics:
Variable: weaners_air_quality Class: factor 1 6 2 79 3 9 NA's 6 Mode: 2 Proportion of levels: 1 0.06, 2 0.84, 3 0.10 Levels: 1, 2, 3 NA count: 6
weaners_airspace_with_other_agegroup
Summary statistics:
Variable: weaners_airspace_with_other_agegroup Class: factor 2 23 3 52 4 19 NA's 6 Mode: 3 Proportion of levels: 2 0.24, 3 0.55, 4 0.20 Levels: 2, 3, 4 NA count: 6
fattening_pigs_reduced_general_wellbeing
Summary statistics:
Variable: fattening_pigs_reduced_general_wellbeing Class: logical FALSE 46 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.98, TRUE 0.02 NA count: 53
fattening_pigs_sneezing
Summary statistics:
Variable: fattening_pigs_sneezing Class: numeric Min. 0.000 1st Qu. 0.000 Median 0.000 Mean 2.885 3rd Qu. 6.700 Max. 15.000 NA's 87 Variance: NA Shapiro-Wilk p-value: 0.0002225 (not normal) NA count: 87
fattening_pigs_coughing
Summary statistics:
Variable: fattening_pigs_coughing Class: numeric Min. 0.0000 1st Qu. 0.0000 Median 0.0000 Mean 0.5769 3rd Qu. 0.0000 Max. 4.8000 NA's 87 Variance: NA Shapiro-Wilk p-value: 0.000005377 (not normal) NA count: 87
fattening_pigs_qm_per_animal
Summary statistics:
Variable: fattening_pigs_qm_per_animal Class: numeric Min. 0.3000 1st Qu. 0.6725 Median 0.9450 Mean 1.0985 3rd Qu. 1.3150 Max. 4.7000 NA's 54 Variance: NA Shapiro-Wilk p-value: 0.00000005605 (not normal) NA count: 54
fattening_pigs_feeding_site_per_animal_factor
Summary statistics:
Variable: fattening_pigs_feeding_site_per_animal_factor Class: factor under 25 Animals/feeder 8 over 25 Animals/feeder 5 under 25cm trough/animal 10 over 25cm trough/animal 21 Other 3 NA 53 Mode: NA Proportion of levels: under 25 Animals/feeder 0.08, over 25 Animals/feeder 0.05, under 25cm trough/animal 0.10, over 25cm trough/animal 0.21, Other 0.03, NA 0.53 Levels: under 25 Animals/feeder, over 25 Animals/feeder, under 25cm trough/animal, over 25cm trough/animal, Other, NA NA count: 0
fattening_pigs_animals_per_water_source
Summary statistics:
Variable: fattening_pigs_animals_per_water_source Class: numeric Min. 3.00 1st Qu. 8.65 Median 12.00 Mean 13.47 3rd Qu. 17.10 Max. 33.50 NA's 53 Variance: NA Shapiro-Wilk p-value: 0.01312 (not normal) NA count: 53
fattening_pigs_room_temperature
Summary statistics:
Variable: fattening_pigs_room_temperature Class: numeric Min. 2.90 1st Qu. 16.57 Median 19.85 Mean 19.48 3rd Qu. 22.23 Max. 31.50 NA's 60 Variance: NA Shapiro-Wilk p-value: 0.1944 (normal) NA count: 60
fattening_pigs_airflow
Summary statistics:
Variable: fattening_pigs_airflow Class: numeric Min. 0.0400 1st Qu. 0.1500 Median 0.2000 Mean 0.2372 3rd Qu. 0.3000 Max. 0.6000 NA's 61 Variance: NA Shapiro-Wilk p-value: 0.001534 (not normal) NA count: 61
fattening_pigs_air_quality
Summary statistics:
Variable: fattening_pigs_air_quality Class: factor 1 4 2 32 3 11 NA's 53 Mode: 2 Proportion of levels: 1 0.09, 2 0.68, 3 0.23 Levels: 1, 2, 3 NA count: 53
fattening_pigs_airspace_with_other_agegroup
Summary statistics:
Variable: fattening_pigs_airspace_with_other_agegroup Class: factor 1 9 2 16 3 13 4 9 NA's 53 Mode: 2 Proportion of levels: 1 0.19, 2 0.34, 3 0.28, 4 0.19 Levels: 1, 2, 3, 4 NA count: 53
report_killed_weaners
Summary statistics:
Variable: report_killed_weaners Class: logical FALSE 97 TRUE 3 Mode: FALSE Proportion of levels: FALSE 0.97, TRUE 0.03 NA count: 0
report_killed_fattening_pigs
Summary statistics:
Variable: report_killed_fattening_pigs Class: logical FALSE 98 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.98, TRUE 0.02 NA count: 0
report_killed_young_sows
Summary statistics:
Variable: report_killed_young_sows Class: logical FALSE 99 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.99, TRUE 0.01 NA count: 0
report_killed_old_sows
Summary statistics:
Variable: report_killed_old_sows Class: logical FALSE 99 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.99, TRUE 0.01 NA count: 0
Exposures
IAV_positive
Summary statistics:
Variable: IAV_positive Class: logical FALSE 65 TRUE 35 Mode: FALSE Proportion of levels: FALSE 0.65, TRUE 0.35 NA count: 0
total_samples
Summary statistics:
Variable: total_samples Class: integer Min. 9.00 1st Qu. 19.00 Median 19.00 Mean 18.49 3rd Qu. 19.00 Max. 19.00 Variance: 2.475 Shapiro-Wilk p-value: 0.000000000000000001131 (not normal) NA count: 0
positive_pigs
Summary statistics:
Variable: positive_pigs Class: integer Min. 0.00 1st Qu. 0.00 Median 0.00 Mean 1.59 3rd Qu. 1.00 Max. 19.00 Variance: 14.06 Shapiro-Wilk p-value: 0.00000000000000004751 (not normal) NA count: 0
percent_positive_pigs
Summary statistics:
Variable: percent_positive_pigs Class: numeric Min. 0.000 1st Qu. 0.000 Median 0.000 Mean 8.485 3rd Qu. 5.263 Max. 100.000 Variance: 406.6 Shapiro-Wilk p-value: 0.00000000000000003892 (not normal) NA count: 0
min_ct
Summary statistics:
Variable: min_ct Class: numeric Min. 20.61 1st Qu. 31.24 Median 34.69 Mean 33.11 3rd Qu. 36.96 Max. 37.73 NA's 65 Variance: NA Shapiro-Wilk p-value: 0.00006768 (not normal) NA count: 65
max_ct
Summary statistics:
Variable: max_ct Class: numeric Min. 29.21 1st Qu. 34.68 Median 35.14 Mean 35.64 3rd Qu. 37.34 Max. 37.73 NA's 65 Variance: NA Shapiro-Wilk p-value: 0.0003468 (not normal) NA count: 65
mean_ct
Summary statistics:
Variable: mean_ct Class: numeric Min. 28.18 1st Qu. 33.68 Median 34.75 Mean 34.68 3rd Qu. 36.96 Max. 37.73 NA's 65 Variance: NA Shapiro-Wilk p-value: 0.003306 (not normal) NA count: 65
sd_ct
Summary statistics:
Variable: sd_ct Class: numeric Min. 0.3458 1st Qu. 0.4751 Median 1.1683 Mean 1.8308 3rd Qu. 2.8151 Max. 5.1829 NA's 82 Variance: NA Shapiro-Wilk p-value: 0.002632 (not normal) NA count: 82
season_sampling
Summary statistics:
Variable: season_sampling Class: factor winter 23 spring 32 summer 25 autumn 20 Mode: spring Proportion of levels: winter 0.23, spring 0.32, summer 0.25, autumn 0.20 Levels: winter, spring, summer, autumn NA count: 0
canton_factor
Summary statistics:
Variable: canton_factor Class: factor North-West 6 Berne + Solothurn 42 East & Zurich 19 Romandy 14 Lucerne 19 Mode: Berne + Solothurn Proportion of levels: North-West 0.06, Berne + Solothurn 0.42, East & Zurich 0.19, Romandy 0.14, Lucerne 0.19 Levels: North-West, Berne + Solothurn, East & Zurich, Romandy, Lucerne NA count: 0
herdsize
Summary statistics:
Variable: herdsize Class: integer Min. 25 1st Qu. 462 Median 720 Mean 843 3rd Qu. 1114 Max. 4183 Variance: 344813 Shapiro-Wilk p-value: 0.000000007035 (not normal) NA count: 0
production_type_factor
Summary statistics:
Variable: production_type_factor Class: factor 1 11 2 25 3 41 4 14 5 9 Mode: 3 Proportion of levels: 1 0.11, 2 0.25, 3 0.41, 4 0.14, 5 0.09 Levels: 1, 2, 3, 4, 5 NA count: 0
Farrowing_on_farm
Summary statistics:
Variable: Farrowing_on_farm Class: logical FALSE 12 TRUE 88 Mode: TRUE Proportion of levels: FALSE 0.12, TRUE 0.88 NA count: 0
Isemination_on_farm
Summary statistics:
Variable: Isemination_on_farm Class: logical FALSE 30 TRUE 70 Mode: TRUE Proportion of levels: FALSE 0.30, TRUE 0.70 NA count: 0
Gestation_on_farm
Summary statistics:
Variable: Gestation_on_farm Class: logical FALSE 30 TRUE 70 Mode: TRUE Proportion of levels: FALSE 0.30, TRUE 0.70 NA count: 0
Weaners_on_farm
Summary statistics:
Variable: Weaners_on_farm Class: logical FALSE 11 TRUE 89 Mode: TRUE Proportion of levels: FALSE 0.11, TRUE 0.89 NA count: 0
Fattening_on_farm
Summary statistics:
Variable: Fattening_on_farm Class: logical FALSE 37 TRUE 63 Mode: TRUE Proportion of levels: FALSE 0.37, TRUE 0.63 NA count: 0
respiratory_signs
Summary statistics:
Variable: respiratory_signs Class: logical FALSE 85 TRUE 15 Mode: FALSE Proportion of levels: FALSE 0.85, TRUE 0.15 NA count: 0
rectal_temperature_max
Summary statistics:
Variable: rectal_temperature_max Class: numeric Min. 39.20 1st Qu. 40.10 Median 40.30 Mean 40.40 3rd Qu. 40.65 Max. 41.80 NA's 1 Variance: NA Shapiro-Wilk p-value: 0.004161 (not normal) NA count: 1
rectal_temperature_avg
Summary statistics:
Variable: rectal_temperature_avg Class: numeric Min. 38.80 1st Qu. 39.50 Median 39.70 Mean 39.67 3rd Qu. 39.90 Max. 40.40 NA's 1 Variance: NA Shapiro-Wilk p-value: 0.02114 (not normal) NA count: 1
horses_closeby
Summary statistics:
Variable: horses_closeby Class: logical FALSE 92 TRUE 8 Mode: FALSE Proportion of levels: FALSE 0.92, TRUE 0.08 NA count: 0
dogs_closeby
Summary statistics:
Variable: dogs_closeby Class: logical FALSE 55 TRUE 45 Mode: FALSE Proportion of levels: FALSE 0.55, TRUE 0.45 NA count: 0
chicken_closeby
Summary statistics:
Variable: chicken_closeby Class: logical FALSE 67 TRUE 33 Mode: FALSE Proportion of levels: FALSE 0.67, TRUE 0.33 NA count: 0
turkey_closeby
Summary statistics:
Variable: turkey_closeby Class: logical FALSE 98 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.98, TRUE 0.02 NA count: 0
cattle_closeby
Summary statistics:
Variable: cattle_closeby Class: logical FALSE 49 TRUE 51 Mode: TRUE Proportion of levels: FALSE 0.49, TRUE 0.51 NA count: 0
cats_closeby
Summary statistics:
Variable: cats_closeby Class: logical FALSE 35 TRUE 65 Mode: TRUE Proportion of levels: FALSE 0.35, TRUE 0.65 NA count: 0
proximity_to_other_pig_herd
Summary statistics:
Variable: proximity_to_other_pig_herd Class: logical FALSE 33 TRUE 67 Mode: TRUE Proportion of levels: FALSE 0.33, TRUE 0.67 NA count: 0
proximity_to_other_poultry_herd
Summary statistics:
Variable: proximity_to_other_poultry_herd Class: logical FALSE 23 TRUE 77 Mode: TRUE Proportion of levels: FALSE 0.23, TRUE 0.77 NA count: 0
number_suckling_piglets
Summary statistics:
Variable: number_suckling_piglets Class: integer Min. 20.0 1st Qu. 150.0 Median 242.5 Mean 275.6 3rd Qu. 350.0 Max. 1400.0 NA's 12 Variance: NA Shapiro-Wilk p-value: 0.000000003806 (not normal) NA count: 12
number_weaners
Summary statistics:
Variable: number_weaners Class: integer Min. 16.0 1st Qu. 200.0 Median 300.0 Mean 368.5 3rd Qu. 500.0 Max. 2200.0 NA's 11 Variance: NA Shapiro-Wilk p-value: 0.0000000001275 (not normal) NA count: 11
number_fattening_pigs
Summary statistics:
Variable: number_fattening_pigs Class: integer Min. 1 1st Qu. 20 Median 184 Mean 283 3rd Qu. 470 Max. 1400 NA's 37 Variance: NA Shapiro-Wilk p-value: 0.000001303 (not normal) NA count: 37
number_young_sows
Summary statistics:
Variable: number_young_sows Class: integer Min. 2.0 1st Qu. 7.0 Median 10.0 Mean 22.4 3rd Qu. 20.0 Max. 350.0 NA's 28 Variance: NA Shapiro-Wilk p-value: 0.0000000000000004535 (not normal) NA count: 28
number_old_sows
Summary statistics:
Variable: number_old_sows Class: integer Min. 5.0 1st Qu. 40.0 Median 75.0 Mean 87.4 3rd Qu. 116.2 Max. 530.0 NA's 12 Variance: NA Shapiro-Wilk p-value: 0.0000000003521 (not normal) NA count: 12
number_boars
Summary statistics:
Variable: number_boars Class: integer Min. 1.0 1st Qu. 1.0 Median 2.0 Mean 1.8 3rd Qu. 2.0 Max. 4.0 NA's 30 Variance: NA Shapiro-Wilk p-value: 0.00000002447 (not normal) NA count: 30
number_of_origins
Summary statistics:
Variable: number_of_origins Class: integer Min. 1.000 1st Qu. 1.000 Median 2.000 Mean 1.667 3rd Qu. 2.000 Max. 4.000 NA's 13 Variance: NA Shapiro-Wilk p-value: 0.00000000009154 (not normal) NA count: 13
quarantine_concept
Summary statistics:
Variable: quarantine_concept Class: logical FALSE 34 TRUE 66 Mode: TRUE Proportion of levels: FALSE 0.34, TRUE 0.66 NA count: 0
quarantine_time
Summary statistics:
Variable: quarantine_time Class: factor 16 12 4 10 3 10 6 6 5 4 20 3 2 1 other 12 NA's 42 Mode: 16 Proportion of levels: 16 0.21, 4 0.17, 3 0.17, 6 0.10, 5 0.07, 20 0.05, 2 0.02, other 0.21 Levels: 16, 4, 3, 6, 5, 20, 2, other NA count: 42
quarantine_in_herd_contact
Summary statistics:
Variable: quarantine_in_herd_contact Class: logical FALSE 62 TRUE 38 Mode: FALSE Proportion of levels: FALSE 0.62, TRUE 0.38 NA count: 0
herds_of_origin_respiratory_symptoms
Summary statistics:
Variable: herds_of_origin_respiratory_symptoms Class: logical FALSE 96 TRUE 4 Mode: FALSE Proportion of levels: FALSE 0.96, TRUE 0.04 NA count: 0
herds_of_origin_influenza_diagnosis
Summary statistics:
Variable: herds_of_origin_influenza_diagnosis Class: logical FALSE 99 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.99, TRUE 0.01 NA count: 0
production_cycle
Summary statistics:
Variable: production_cycle Class: factor 1 15 2 16 3 47 other 22 Mode: 3 Proportion of levels: 1 0.15, 2 0.16, 3 0.47, other 0.22 Levels: 1, 2, 3, other NA count: 0
mode_stable_occupation_ai_centre
Summary statistics:
Variable: mode_stable_occupation_ai_centre Class: logical FALSE 13 TRUE 55 Mode: TRUE Proportion of levels: FALSE 0.19, TRUE 0.81 NA count: 32
mode_stable_occupation_gestation_stable
Summary statistics:
Variable: mode_stable_occupation_gestation_stable Class: logical FALSE 10 TRUE 64 Mode: TRUE Proportion of levels: FALSE 0.14, TRUE 0.86 NA count: 26
mode_stable_occupation_farrowing_stable
Summary statistics:
Variable: mode_stable_occupation_farrowing_stable Class: logical FALSE 24 TRUE 65 Mode: TRUE Proportion of levels: FALSE 0.27, TRUE 0.73 NA count: 11
cross_fostering_farrowing_stable
Summary statistics:
Variable: cross_fostering_farrowing_stable Class: factor 1 19 2 48 3 22 NA's 11 Mode: 2 Proportion of levels: 1 0.21, 2 0.54, 3 0.25 Levels: 1, 2, 3 NA count: 11
mode_stable_occupation_weaner_stable
Summary statistics:
Variable: mode_stable_occupation_weaner_stable Class: logical FALSE 43 TRUE 48 Mode: TRUE Proportion of levels: FALSE 0.47, TRUE 0.53 NA count: 9
mode_stable_occupation_fattening_stable
Summary statistics:
Variable: mode_stable_occupation_fattening_stable Class: logical FALSE 54 TRUE 9 Mode: FALSE Proportion of levels: FALSE 0.86, TRUE 0.14 NA count: 37
passing_through_other_age_group
Summary statistics:
Variable: passing_through_other_age_group Class: logical FALSE 60 TRUE 40 Mode: FALSE Proportion of levels: FALSE 0.60, TRUE 0.40 NA count: 0
outside_area
Summary statistics:
Variable: outside_area Class: logical FALSE 25 TRUE 75 Mode: TRUE Proportion of levels: FALSE 0.25, TRUE 0.75 NA count: 0
outside_area_ai_centre
Summary statistics:
Variable: outside_area_ai_centre Class: logical FALSE 71 TRUE 29 Mode: FALSE Proportion of levels: FALSE 0.71, TRUE 0.29 NA count: 0
outside_area_gestation_stable
Summary statistics:
Variable: outside_area_gestation_stable Class: logical FALSE 43 TRUE 57 Mode: TRUE Proportion of levels: FALSE 0.43, TRUE 0.57 NA count: 0
outside_area_farrowing_stable
Summary statistics:
Variable: outside_area_farrowing_stable Class: logical FALSE 94 TRUE 6 Mode: FALSE Proportion of levels: FALSE 0.94, TRUE 0.06 NA count: 0
outside_area_weaner_stable
Summary statistics:
Variable: outside_area_weaner_stable Class: logical FALSE 90 TRUE 10 Mode: FALSE Proportion of levels: FALSE 0.90, TRUE 0.10 NA count: 0
outside_area_fattening_stable
Summary statistics:
Variable: outside_area_fattening_stable Class: logical FALSE 63 TRUE 37 Mode: FALSE Proportion of levels: FALSE 0.63, TRUE 0.37 NA count: 0
outside_area_contact_poultry
Summary statistics:
Variable: outside_area_contact_poultry Class: logical FALSE 93 TRUE 7 Mode: FALSE Proportion of levels: FALSE 0.93, TRUE 0.07 NA count: 0
outside_area_contact_wild_birds
Summary statistics:
Variable: outside_area_contact_wild_birds Class: logical FALSE 31 TRUE 69 Mode: TRUE Proportion of levels: FALSE 0.31, TRUE 0.69 NA count: 0
outside_area_contact_wild_boars
Summary statistics:
Variable: outside_area_contact_wild_boars Class: logical FALSE 45 TRUE 55 Mode: TRUE Proportion of levels: FALSE 0.45, TRUE 0.55 NA count: 0
contact_bird_in_stable
Summary statistics:
Variable: contact_bird_in_stable Class: logical FALSE 61 TRUE 39 Mode: FALSE Proportion of levels: FALSE 0.61, TRUE 0.39 NA count: 0
cleaning_ai_centre
Summary statistics:
Variable: cleaning_ai_centre Class: factor 1 18 2 40 3 11 NA's 31 Mode: 2 Proportion of levels: 1 0.26, 2 0.58, 3 0.16 Levels: 1, 2, 3 NA count: 31
cleaning_gestation_stable
Summary statistics:
Variable: cleaning_gestation_stable Class: logical FALSE 26 TRUE 49 Mode: TRUE Proportion of levels: FALSE 0.35, TRUE 0.65 NA count: 25
cleaning_farrowing_stable
Summary statistics:
Variable: cleaning_farrowing_stable Class: logical FALSE 4 TRUE 85 Mode: TRUE Proportion of levels: FALSE 0.04, TRUE 0.96 NA count: 11
cleaning_weaner_stable
Summary statistics:
Variable: cleaning_weaner_stable Class: logical FALSE 11 TRUE 79 Mode: TRUE Proportion of levels: FALSE 0.12, TRUE 0.88 NA count: 10
cleaning_fattening_stable
Summary statistics:
Variable: cleaning_fattening_stable Class: factor 1 13 2 36 3 14 NA's 37 Mode: 2 Proportion of levels: 1 0.21, 2 0.57, 3 0.22 Levels: 1, 2, 3 NA count: 37
cleaning_quarantine
Summary statistics:
Variable: cleaning_quarantine Class: factor 1 9 2 7 3 8 NA's 76 Mode: 1 Proportion of levels: 1 0.38, 2 0.29, 3 0.33 Levels: 1, 2, 3 NA count: 76
disinfection_ai_centre
Summary statistics:
Variable: disinfection_ai_centre Class: logical FALSE 54 TRUE 15 Mode: FALSE Proportion of levels: FALSE 0.78, TRUE 0.22 NA count: 31
disinfection_gestation_stable
Summary statistics:
Variable: disinfection_gestation_stable Class: logical FALSE 62 TRUE 13 Mode: FALSE Proportion of levels: FALSE 0.83, TRUE 0.17 NA count: 25
disinfection_farrowing_stable
Summary statistics:
Variable: disinfection_farrowing_stable Class: factor 1 47 2 9 3 34 NA's 10 Mode: 1 Proportion of levels: 1 0.52, 2 0.10, 3 0.38 Levels: 1, 2, 3 NA count: 10
disinfection_weaner_stable
Summary statistics:
Variable: disinfection_weaner_stable Class: factor 1 52 2 10 3 28 NA's 10 Mode: 1 Proportion of levels: 1 0.58, 2 0.11, 3 0.31 Levels: 1, 2, 3 NA count: 10
disinfection_fattening_stable
Summary statistics:
Variable: disinfection_fattening_stable Class: logical FALSE 48 TRUE 15 Mode: FALSE Proportion of levels: FALSE 0.76, TRUE 0.24 NA count: 37
disinfection_quarantine
Summary statistics:
Variable: disinfection_quarantine Class: logical FALSE 18 TRUE 6 Mode: FALSE Proportion of levels: FALSE 0.75, TRUE 0.25 NA count: 76
drying_ai_centre
Summary statistics:
Variable: drying_ai_centre Class: factor 1 28 2 29 3 12 NA's 31 Mode: 2 Proportion of levels: 1 0.41, 2 0.42, 3 0.17 Levels: 1, 2, 3 NA count: 31
drying_gestation_stable
Summary statistics:
Variable: drying_gestation_stable Class: logical FALSE 46 TRUE 29 Mode: FALSE Proportion of levels: FALSE 0.61, TRUE 0.39 NA count: 25
drying_farrowing_stable
Summary statistics:
Variable: drying_farrowing_stable Class: logical FALSE 12 TRUE 77 Mode: TRUE Proportion of levels: FALSE 0.13, TRUE 0.87 NA count: 11
drying_weaner_stable
Summary statistics:
Variable: drying_weaner_stable Class: logical FALSE 9 TRUE 81 Mode: TRUE Proportion of levels: FALSE 0.10, TRUE 0.90 NA count: 10
drying_fattening_stable
Summary statistics:
Variable: drying_fattening_stable Class: factor 1 22 2 27 3 13 NA's 38 Mode: 2 Proportion of levels: 1 0.35, 2 0.44, 3 0.21 Levels: 1, 2, 3 NA count: 38
drying_quarantine
Summary statistics:
Variable: drying_quarantine Class: logical FALSE 13 TRUE 11 Mode: FALSE Proportion of levels: FALSE 0.54, TRUE 0.46 NA count: 76
cleaning_disinfection_transport_vehicle
Summary statistics:
Variable: cleaning_disinfection_transport_vehicle Class: logical FALSE 4 TRUE 77 Mode: TRUE Proportion of levels: FALSE 0.05, TRUE 0.95 NA count: 19
cleaning_shipment_area
Summary statistics:
Variable: cleaning_shipment_area Class: logical FALSE 61 TRUE 35 Mode: FALSE Proportion of levels: FALSE 0.64, TRUE 0.36 NA count: 4
caretaker_number
Summary statistics:
Variable: caretaker_number Class: integer Min. 1.00 1st Qu. 2.00 Median 3.00 Mean 2.85 3rd Qu. 3.00 Max. 16.00 Variance: 2.876 Shapiro-Wilk p-value: 0.000000000000004927 (not normal) NA count: 0
caretaker_ppe_stable
Summary statistics:
Variable: caretaker_ppe_stable Class: logical FALSE 35 TRUE 65 Mode: TRUE Proportion of levels: FALSE 0.35, TRUE 0.65 NA count: 0
caretaker_ppe_washing_interval
Summary statistics:
Variable: caretaker_ppe_washing_interval Class: logical FALSE 12 TRUE 88 Mode: TRUE Proportion of levels: FALSE 0.12, TRUE 0.88 NA count: 0
caretaker_ppe_per_unit
Summary statistics:
Variable: caretaker_ppe_per_unit Class: logical FALSE 94 TRUE 6 Mode: FALSE Proportion of levels: FALSE 0.94, TRUE 0.06 NA count: 0
caretaker_per_unit
Summary statistics:
Variable: caretaker_per_unit Class: logical FALSE 79 TRUE 21 Mode: FALSE Proportion of levels: FALSE 0.79, TRUE 0.21 NA count: 0
caretaker_work_flow_hygiene_between_units
Summary statistics:
Variable: caretaker_work_flow_hygiene_between_units Class: logical FALSE 31 TRUE 69 Mode: TRUE Proportion of levels: FALSE 0.31, TRUE 0.69 NA count: 0
caretaker_entry_ppe_only
Summary statistics:
Variable: caretaker_entry_ppe_only Class: logical FALSE 49 TRUE 51 Mode: TRUE Proportion of levels: FALSE 0.49, TRUE 0.51 NA count: 0
caretaker_disease_management
Summary statistics:
Variable: caretaker_disease_management Class: logical FALSE 87 TRUE 12 Mode: FALSE Proportion of levels: FALSE 0.88, TRUE 0.12 NA count: 1
caretaker_hands_washed_before_entry
Summary statistics:
Variable: caretaker_hands_washed_before_entry Class: logical FALSE 55 TRUE 45 Mode: FALSE Proportion of levels: FALSE 0.55, TRUE 0.45 NA count: 0
caretaker_boot_disinfection
Summary statistics:
Variable: caretaker_boot_disinfection Class: logical FALSE 78 TRUE 22 Mode: FALSE Proportion of levels: FALSE 0.78, TRUE 0.22 NA count: 0
caretaker_contact_other_pigs
Summary statistics:
Variable: caretaker_contact_other_pigs Class: logical FALSE 78 TRUE 7 Mode: FALSE Proportion of levels: FALSE 0.92, TRUE 0.08 NA count: 15
caretaker_contact_poultry
Summary statistics:
Variable: caretaker_contact_poultry Class: logical FALSE 71 TRUE 8 Mode: FALSE Proportion of levels: FALSE 0.90, TRUE 0.10 NA count: 21
visitors_cumulative_contact_hours
Summary statistics:
Variable: visitors_cumulative_contact_hours Class: numeric Min. 1.00 1st Qu. 3.00 Median 6.00 Mean 7.03 3rd Qu. 9.00 Max. 22.00 Variance: 24.09 Shapiro-Wilk p-value: 0.000001059 (not normal) NA count: 0
visitors_list
Summary statistics:
Variable: visitors_list Class: logical FALSE 3 TRUE 97 Mode: TRUE Proportion of levels: FALSE 0.03, TRUE 0.97 NA count: 0
ppe_visitors
Summary statistics:
Variable: ppe_visitors Class: logical FALSE 5 TRUE 95 Mode: TRUE Proportion of levels: FALSE 0.05, TRUE 0.95 NA count: 0
visitors_hands_washed_before_entry
Summary statistics:
Variable: visitors_hands_washed_before_entry Class: logical FALSE 50 TRUE 50 Mode: FALSE Proportion of levels: FALSE 0.50, TRUE 0.50 NA count: 0
visitors_disease_management
Summary statistics:
Variable: visitors_disease_management Class: logical FALSE 20 TRUE 5 Mode: FALSE Proportion of levels: FALSE 0.80, TRUE 0.20 NA count: 75
visitors_contact_other_pigs
Summary statistics:
Variable: visitors_contact_other_pigs Class: logical FALSE 9 TRUE 67 Mode: TRUE Proportion of levels: FALSE 0.12, TRUE 0.88 NA count: 24
visitors_respiratory_symptoms
Summary statistics:
Variable: visitors_respiratory_symptoms Class: logical FALSE 98 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.98, TRUE 0.02 NA count: 0
return_to_service_rate
Summary statistics:
Variable: return_to_service_rate Class: logical FALSE 14 TRUE 54 Mode: TRUE Proportion of levels: FALSE 0.21, TRUE 0.79 NA count: 32
farrowing_rate
Summary statistics:
Variable: farrowing_rate Class: logical FALSE 19 TRUE 62 Mode: TRUE Proportion of levels: FALSE 0.23, TRUE 0.77 NA count: 19
piglets_per_sow_year
Summary statistics:
Variable: piglets_per_sow_year Class: logical FALSE 8 TRUE 74 Mode: TRUE Proportion of levels: FALSE 0.10, TRUE 0.90 NA count: 18
abortions_per_sow_year
Summary statistics:
Variable: abortions_per_sow_year Class: logical FALSE 1 TRUE 81 Mode: TRUE Proportion of levels: FALSE 0.01, TRUE 0.99 NA count: 18
piglet_mortality
Summary statistics:
Variable: piglet_mortality Class: logical FALSE 15 TRUE 66 Mode: TRUE Proportion of levels: FALSE 0.19, TRUE 0.81 NA count: 19
feed_conversion_rate_fattening_pigs
Summary statistics:
Variable: feed_conversion_rate_fattening_pigs Class: logical FALSE 3 TRUE 11 Mode: TRUE Proportion of levels: FALSE 0.21, TRUE 0.79 NA count: 86
respiratory_history_swine
Summary statistics:
Variable: respiratory_history_swine Class: factor 1 54 2 20 3 5 NA's 21 Mode: 1 Proportion of levels: 1 0.68, 2 0.25, 3 0.06 Levels: 1, 2, 3 NA count: 21
time_respiratory_disease
Summary statistics:
Variable: time_respiratory_disease Class: logical FALSE 6 TRUE 52 Mode: TRUE Proportion of levels: FALSE 0.10, TRUE 0.90 NA count: 42
frequency_respi_outbreak
Summary statistics:
Variable: frequency_respi_outbreak Class: factor never 36 few pigs affected no outbreak 19 once 23 1x/year 11 2x/year 7 3x or more per year 4 Mode: never Proportion of levels: never 0.36, few pigs affected no outbreak 0.19, once 0.23, 1x/year 0.11, 2x/year 0.07, 3x or more per year 0.04 Levels: never, few pigs affected no outbreak, once, 1x/year, 2x/year, 3x or more per year NA count: 0
outbreak_since_examination
Summary statistics:
Variable: outbreak_since_examination Class: logical FALSE 95 TRUE 5 Mode: FALSE Proportion of levels: FALSE 0.95, TRUE 0.05 NA count: 0
suckling_piglets_diseased
Summary statistics:
Variable: suckling_piglets_diseased Class: logical FALSE 94 TRUE 6 Mode: FALSE Proportion of levels: FALSE 0.94, TRUE 0.06 NA count: 0
weaners_diseased
Summary statistics:
Variable: weaners_diseased Class: logical FALSE 55 TRUE 45 Mode: FALSE Proportion of levels: FALSE 0.55, TRUE 0.45 NA count: 0
fattening_pigs_diseased
Summary statistics:
Variable: fattening_pigs_diseased Class: logical FALSE 73 TRUE 27 Mode: FALSE Proportion of levels: FALSE 0.73, TRUE 0.27 NA count: 0
young_sows_diseased
Summary statistics:
Variable: young_sows_diseased Class: logical FALSE 97 TRUE 3 Mode: FALSE Proportion of levels: FALSE 0.97, TRUE 0.03 NA count: 0
old_sows_diseased
Summary statistics:
Variable: old_sows_diseased Class: logical FALSE 97 TRUE 3 Mode: FALSE Proportion of levels: FALSE 0.97, TRUE 0.03 NA count: 0
boars_diseased
Summary statistics:
Variable: boars_diseased Class: logical FALSE 99 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.99, TRUE 0.01 NA count: 0
symptom_swine_sneezing
Summary statistics:
Variable: symptom_swine_sneezing Class: logical FALSE 80 TRUE 20 Mode: FALSE Proportion of levels: FALSE 0.80, TRUE 0.20 NA count: 0
symptom_swine_coughing
Summary statistics:
Variable: symptom_swine_coughing Class: logical FALSE 37 TRUE 63 Mode: TRUE Proportion of levels: FALSE 0.37, TRUE 0.63 NA count: 0
symptom_swine_nasal_discharge
Summary statistics:
Variable: symptom_swine_nasal_discharge Class: logical FALSE 94 TRUE 6 Mode: FALSE Proportion of levels: FALSE 0.94, TRUE 0.06 NA count: 0
symptom_swine_fever
Summary statistics:
Variable: symptom_swine_fever Class: logical FALSE 85 TRUE 15 Mode: FALSE Proportion of levels: FALSE 0.85, TRUE 0.15 NA count: 0
symptom_swine_feed_intake_red
Summary statistics:
Variable: symptom_swine_feed_intake_red Class: logical FALSE 66 TRUE 34 Mode: FALSE Proportion of levels: FALSE 0.66, TRUE 0.34 NA count: 0
symptom_swine_apathy
Summary statistics:
Variable: symptom_swine_apathy Class: logical FALSE 74 TRUE 26 Mode: FALSE Proportion of levels: FALSE 0.74, TRUE 0.26 NA count: 0
symptom_swine_dyspnoea
Summary statistics:
Variable: symptom_swine_dyspnoea Class: logical FALSE 87 TRUE 13 Mode: FALSE Proportion of levels: FALSE 0.87, TRUE 0.13 NA count: 0
vet_consultation
Summary statistics:
Variable: vet_consultation Class: logical FALSE 79 TRUE 21 Mode: FALSE Proportion of levels: FALSE 0.79, TRUE 0.21 NA count: 0
influenza_diagnosis
Summary statistics:
Variable: influenza_diagnosis Class: logical FALSE 96 TRUE 4 Mode: FALSE Proportion of levels: FALSE 0.96, TRUE 0.04 NA count: 0
influenza_vaccination
Summary statistics:
Variable: influenza_vaccination Class: logical FALSE 98 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.98, TRUE 0.02 NA count: 0
respiratory_history_human
Summary statistics:
Variable: respiratory_history_human Class: logical FALSE 88 TRUE 12 Mode: FALSE Proportion of levels: FALSE 0.88, TRUE 0.12 NA count: 0
respiratory_history_contact_person
Summary statistics:
Variable: respiratory_history_contact_person Class: logical FALSE 94 TRUE 6 Mode: FALSE Proportion of levels: FALSE 0.94, TRUE 0.06 NA count: 0
symptom_human_sneezing
Summary statistics:
Variable: symptom_human_sneezing Class: logical FALSE 88 TRUE 12 Mode: FALSE Proportion of levels: FALSE 0.88, TRUE 0.12 NA count: 0
symptom_human_coughing
Summary statistics:
Variable: symptom_human_coughing Class: logical FALSE 91 TRUE 9 Mode: FALSE Proportion of levels: FALSE 0.91, TRUE 0.09 NA count: 0
symptom_human_bronchitis
Summary statistics:
Variable: symptom_human_bronchitis Class: logical FALSE 99 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.99, TRUE 0.01 NA count: 0
symptom_human_pneumonia
Summary statistics:
Variable: symptom_human_pneumonia Class: logical FALSE 99 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.99, TRUE 0.01 NA count: 0
symptom_human_fever
Summary statistics:
Variable: symptom_human_fever Class: logical FALSE 96 TRUE 4 Mode: FALSE Proportion of levels: FALSE 0.96, TRUE 0.04 NA count: 0
symptom_human_headache
Summary statistics:
Variable: symptom_human_headache Class: logical FALSE 96 TRUE 4 Mode: FALSE Proportion of levels: FALSE 0.96, TRUE 0.04 NA count: 0
symptom_human_myalgia
Summary statistics:
Variable: symptom_human_myalgia Class: logical FALSE 97 TRUE 3 Mode: FALSE Proportion of levels: FALSE 0.97, TRUE 0.03 NA count: 0
symptom_severity
Summary statistics:
Variable: symptom_severity Class: logical FALSE 8 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.80, TRUE 0.20 NA count: 90
physician_consultation
Summary statistics:
Variable: physician_consultation Class: logical FALSE 98 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.98, TRUE 0.02 NA count: 0
flu_vaccination
Summary statistics:
Variable: flu_vaccination Class: logical FALSE 93 TRUE 7 Mode: FALSE Proportion of levels: FALSE 0.93, TRUE 0.07 NA count: 0
flu_vaccination_contacts
Summary statistics:
Variable: flu_vaccination_contacts Class: logical FALSE 88 TRUE 12 Mode: FALSE Proportion of levels: FALSE 0.88, TRUE 0.12 NA count: 0
chronic_disease_condition
Summary statistics:
Variable: chronic_disease_condition Class: logical FALSE 83 TRUE 17 Mode: FALSE Proportion of levels: FALSE 0.83, TRUE 0.17 NA count: 0
smoker
Summary statistics:
Variable: smoker Class: logical FALSE 73 TRUE 27 Mode: FALSE Proportion of levels: FALSE 0.73, TRUE 0.27 NA count: 0
Age_weeks_factor
Summary statistics:
Variable: Age_weeks_factor Class: factor weaners_4–5 55 weaners_6–7 17 weaners_8–9 4 weaners_10–12 12 weaners_mixed_ages 12 Mode: weaners_4–5 Proportion of levels: weaners_4–5 0.55, weaners_6–7 0.17, weaners_8–9 0.04, weaners_10–12 0.12, weaners_mixed_ages 0.12 Levels: weaners_4–5, weaners_6–7, weaners_8–9, weaners_10–12, weaners_mixed_ages NA count: 0
separation_quarantine_area
Summary statistics:
Variable: separation_quarantine_area Class: factor 1 8 2 14 3 76 NA's 2 Mode: 3 Proportion of levels: 1 0.08, 2 0.14, 3 0.78 Levels: 1, 2, 3 NA count: 2
bird_nests
Summary statistics:
Variable: bird_nests Class: logical FALSE 79 TRUE 21 Mode: FALSE Proportion of levels: FALSE 0.79, TRUE 0.21 NA count: 0
farrowing_piglets_reduced_general_wellbeing
Summary statistics:
Variable: farrowing_piglets_reduced_general_wellbeing Class: logical FALSE 84 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.99, TRUE 0.01 NA count: 15
farrowing_piglets_sneezing
Summary statistics:
Variable: farrowing_piglets_sneezing Class: numeric Min. 0.000 1st Qu. 0.000 Median 0.000 Mean 4.647 3rd Qu. 8.000 Max. 33.000 NA's 15 Variance: NA Shapiro-Wilk p-value: 0.0000000000008049 (not normal) NA count: 15
farrowing_piglets_coughing
Summary statistics:
Variable: farrowing_piglets_coughing Class: numeric Min. 0.0000 1st Qu. 0.0000 Median 0.0000 Mean 0.8353 3rd Qu. 0.0000 Max. 17.0000 NA's 15 Variance: NA Shapiro-Wilk p-value: 0.000000000000000003459 (not normal) NA count: 15
farrowing_room_temperature
Summary statistics:
Variable: farrowing_room_temperature Class: numeric Min. 12.80 1st Qu. 17.65 Median 19.30 Mean 19.75 3rd Qu. 21.43 Max. 30.20 NA's 28 Variance: NA Shapiro-Wilk p-value: 0.1633 (normal) NA count: 28
farrowing_nest_temperature_ok
Summary statistics:
Variable: farrowing_nest_temperature_ok Class: logical FALSE 14 TRUE 65 Mode: TRUE Proportion of levels: FALSE 0.18, TRUE 0.82 NA count: 21
farrowing_airflow
Summary statistics:
Variable: farrowing_airflow Class: numeric Min. 0.0000 1st Qu. 0.1000 Median 0.2000 Mean 0.1988 3rd Qu. 0.2050 Max. 1.0000 NA's 32 Variance: NA Shapiro-Wilk p-value: 0.00000002934 (not normal) NA count: 32
farrowing_air_quality
Summary statistics:
Variable: farrowing_air_quality Class: factor 1 14 2 61 3 11 NA's 14 Mode: 2 Proportion of levels: 1 0.16, 2 0.71, 3 0.13 Levels: 1, 2, 3 NA count: 14
farrowing_airspace_with_other_agegroup
Summary statistics:
Variable: farrowing_airspace_with_other_agegroup Class: factor 1 30 2 43 3 12 NA's 15 Mode: 2 Proportion of levels: 1 0.35, 2 0.51, 3 0.14 Levels: 1, 2, 3 NA count: 15
ai_sows_room_temperature
Summary statistics:
Variable: ai_sows_room_temperature Class: numeric Min. 8.70 1st Qu. 15.05 Median 18.00 Mean 18.53 3rd Qu. 21.02 Max. 30.40 NA's 54 Variance: NA Shapiro-Wilk p-value: 0.6843 (normal) NA count: 54
ai_sows_airflow
Summary statistics:
Variable: ai_sows_airflow Class: numeric Min. 0.0200 1st Qu. 0.1175 Median 0.2000 Mean 0.2211 3rd Qu. 0.3000 Max. 0.5000 NA's 56 Variance: NA Shapiro-Wilk p-value: 0.01042 (not normal) NA count: 56
ai_sows_air_quality
Summary statistics:
Variable: ai_sows_air_quality Class: factor 1 10 2 39 3 9 NA's 42 Mode: 2 Proportion of levels: 1 0.17, 2 0.67, 3 0.16 Levels: 1, 2, 3 NA count: 42
ai_airspace_with_other_agegroup
Summary statistics:
Variable: ai_airspace_with_other_agegroup Class: factor 1 7 2 25 3 25 NA's 43 Mode: 2 Proportion of levels: 1 0.12, 2 0.44, 3 0.44 Levels: 1, 2, 3 NA count: 43
gestation_sows_qm_per_animal
Summary statistics:
Variable: gestation_sows_qm_per_animal Class: numeric Min. 1.970 1st Qu. 2.500 Median 3.210 Mean 3.701 3rd Qu. 4.440 Max. 8.870 NA's 27 Variance: NA Shapiro-Wilk p-value: 0.0000005447 (not normal) NA count: 27
gestation_sows_animals_per_water_source
Summary statistics:
Variable: gestation_sows_animals_per_water_source Class: numeric Min. 0.330 1st Qu. 6.150 Median 8.400 Mean 9.368 3rd Qu. 12.000 Max. 45.000 NA's 27 Variance: NA Shapiro-Wilk p-value: 0.0000000104 (not normal) NA count: 27
gestation_sows_room_temperature
Summary statistics:
Variable: gestation_sows_room_temperature Class: numeric Min. 4.80 1st Qu. 14.10 Median 18.30 Mean 18.13 3rd Qu. 20.70 Max. 32.40 NA's 39 Variance: NA Shapiro-Wilk p-value: 0.464 (normal) NA count: 39
gestation_sows_airflow
Summary statistics:
Variable: gestation_sows_airflow Class: numeric Min. 0.0000 1st Qu. 0.1300 Median 0.2000 Mean 0.2692 3rd Qu. 0.3000 Max. 1.5000 NA's 41 Variance: NA Shapiro-Wilk p-value: 0.0000000001037 (not normal) NA count: 41
gestation_sows_air_quality
Summary statistics:
Variable: gestation_sows_air_quality Class: factor 1 24 2 43 3 5 NA's 28 Mode: 2 Proportion of levels: 1 0.33, 2 0.60, 3 0.07 Levels: 1, 2, 3 NA count: 28
gestation_sows_airspace_with_other_agegroup
Summary statistics:
Variable: gestation_sows_airspace_with_other_agegroup Class: factor 1 21 2 28 3 23 NA's 28 Mode: 2 Proportion of levels: 1 0.29, 2 0.39, 3 0.32 Levels: 1, 2, 3 NA count: 28
weaners_reduced_general_wellbeing
Summary statistics:
Variable: weaners_reduced_general_wellbeing Class: logical FALSE 93 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.99, TRUE 0.01 NA count: 6
weaners_sneezing
Summary statistics:
Variable: weaners_sneezing Class: numeric Min. 0.000 1st Qu. 0.500 Median 3.185 Mean 5.996 3rd Qu. 7.825 Max. 53.300 NA's 6 Variance: NA Shapiro-Wilk p-value: 0.0000000000008523 (not normal) NA count: 6
weaners_coughing
Summary statistics:
Variable: weaners_coughing Class: numeric Min. 0.0000 1st Qu. 0.0000 Median 0.0000 Mean 0.8978 3rd Qu. 0.8350 Max. 7.6000 NA's 6 Variance: NA Shapiro-Wilk p-value: 0.00000000000001055 (not normal) NA count: 6
weaners_discharge
Summary statistics:
Variable: weaners_discharge Class: logical FALSE 91 TRUE 3 Mode: FALSE Proportion of levels: FALSE 0.97, TRUE 0.03 NA count: 6
weaners_qm_per_animal
Summary statistics:
Variable: weaners_qm_per_animal Class: numeric Min. 0.1800 1st Qu. 0.3100 Median 0.3700 Mean 0.4066 3rd Qu. 0.4400 Max. 1.2300 NA's 6 Variance: NA Shapiro-Wilk p-value: 0.0000000008641 (not normal) NA count: 6
weaners_animals_per_feeding_site_factor
Summary statistics:
Variable: weaners_animals_per_feeding_site_factor Class: factor <20 27 <30 21 <40 21 >40 17 trough 8 NA's 6 Mode: <20 Proportion of levels: <20 0.29, <30 0.22, <40 0.22, >40 0.18, trough 0.09 Levels: <20, <30, <40, >40, trough NA count: 6
weaners_animals_per_water_source
Summary statistics:
Variable: weaners_animals_per_water_source Class: numeric Min. 6.000 1st Qu. 9.762 Median 11.850 Mean 14.886 3rd Qu. 18.375 Max. 50.000 NA's 6 Variance: NA Shapiro-Wilk p-value: 0.0000000001342 (not normal) NA count: 6
weaners_room_temperature
Summary statistics:
Variable: weaners_room_temperature Class: numeric Min. 7.50 1st Qu. 16.80 Median 19.55 Mean 19.70 3rd Qu. 22.60 Max. 29.40 NA's 20 Variance: NA Shapiro-Wilk p-value: 0.5194 (normal) NA count: 20
weaners_airflow
Summary statistics:
Variable: weaners_airflow Class: numeric Min. 0.0000 1st Qu. 0.1000 Median 0.1700 Mean 0.2074 3rd Qu. 0.2500 Max. 0.7000 NA's 23 Variance: NA Shapiro-Wilk p-value: 0.0000003241 (not normal) NA count: 23
weaners_air_quality
Summary statistics:
Variable: weaners_air_quality Class: factor 1 6 2 79 3 9 NA's 6 Mode: 2 Proportion of levels: 1 0.06, 2 0.84, 3 0.10 Levels: 1, 2, 3 NA count: 6
weaners_airspace_with_other_agegroup
Summary statistics:
Variable: weaners_airspace_with_other_agegroup Class: factor 2 23 3 52 4 19 NA's 6 Mode: 3 Proportion of levels: 2 0.24, 3 0.55, 4 0.20 Levels: 2, 3, 4 NA count: 6
fattening_pigs_reduced_general_wellbeing
Summary statistics:
Variable: fattening_pigs_reduced_general_wellbeing Class: logical FALSE 46 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.98, TRUE 0.02 NA count: 53
fattening_pigs_sneezing
Summary statistics:
Variable: fattening_pigs_sneezing Class: numeric Min. 0.000 1st Qu. 0.000 Median 0.000 Mean 2.885 3rd Qu. 6.700 Max. 15.000 NA's 87 Variance: NA Shapiro-Wilk p-value: 0.0002225 (not normal) NA count: 87
fattening_pigs_coughing
Summary statistics:
Variable: fattening_pigs_coughing Class: numeric Min. 0.0000 1st Qu. 0.0000 Median 0.0000 Mean 0.5769 3rd Qu. 0.0000 Max. 4.8000 NA's 87 Variance: NA Shapiro-Wilk p-value: 0.000005377 (not normal) NA count: 87
fattening_pigs_qm_per_animal
Summary statistics:
Variable: fattening_pigs_qm_per_animal Class: numeric Min. 0.3000 1st Qu. 0.6725 Median 0.9450 Mean 1.0985 3rd Qu. 1.3150 Max. 4.7000 NA's 54 Variance: NA Shapiro-Wilk p-value: 0.00000005605 (not normal) NA count: 54
fattening_pigs_feeding_site_per_animal_factor
Summary statistics:
Variable: fattening_pigs_feeding_site_per_animal_factor Class: factor under 25 Animals/feeder 8 over 25 Animals/feeder 5 under 25cm trough/animal 10 over 25cm trough/animal 21 Other 3 NA 53 Mode: NA Proportion of levels: under 25 Animals/feeder 0.08, over 25 Animals/feeder 0.05, under 25cm trough/animal 0.10, over 25cm trough/animal 0.21, Other 0.03, NA 0.53 Levels: under 25 Animals/feeder, over 25 Animals/feeder, under 25cm trough/animal, over 25cm trough/animal, Other, NA NA count: 0
fattening_pigs_animals_per_water_source
Summary statistics:
Variable: fattening_pigs_animals_per_water_source Class: numeric Min. 3.00 1st Qu. 8.65 Median 12.00 Mean 13.47 3rd Qu. 17.10 Max. 33.50 NA's 53 Variance: NA Shapiro-Wilk p-value: 0.01312 (not normal) NA count: 53
fattening_pigs_room_temperature
Summary statistics:
Variable: fattening_pigs_room_temperature Class: numeric Min. 2.90 1st Qu. 16.57 Median 19.85 Mean 19.48 3rd Qu. 22.23 Max. 31.50 NA's 60 Variance: NA Shapiro-Wilk p-value: 0.1944 (normal) NA count: 60
fattening_pigs_airflow
Summary statistics:
Variable: fattening_pigs_airflow Class: numeric Min. 0.0400 1st Qu. 0.1500 Median 0.2000 Mean 0.2372 3rd Qu. 0.3000 Max. 0.6000 NA's 61 Variance: NA Shapiro-Wilk p-value: 0.001534 (not normal) NA count: 61
fattening_pigs_air_quality
Summary statistics:
Variable: fattening_pigs_air_quality Class: factor 1 4 2 32 3 11 NA's 53 Mode: 2 Proportion of levels: 1 0.09, 2 0.68, 3 0.23 Levels: 1, 2, 3 NA count: 53
fattening_pigs_airspace_with_other_agegroup
Summary statistics:
Variable: fattening_pigs_airspace_with_other_agegroup Class: factor 1 9 2 16 3 13 4 9 NA's 53 Mode: 2 Proportion of levels: 1 0.19, 2 0.34, 3 0.28, 4 0.19 Levels: 1, 2, 3, 4 NA count: 53
report_killed_weaners
Summary statistics:
Variable: report_killed_weaners Class: logical FALSE 97 TRUE 3 Mode: FALSE Proportion of levels: FALSE 0.97, TRUE 0.03 NA count: 0
report_killed_fattening_pigs
Summary statistics:
Variable: report_killed_fattening_pigs Class: logical FALSE 98 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.98, TRUE 0.02 NA count: 0
report_killed_young_sows
Summary statistics:
Variable: report_killed_young_sows Class: logical FALSE 99 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.99, TRUE 0.01 NA count: 0
report_killed_old_sows
Summary statistics:
Variable: report_killed_old_sows Class: logical FALSE 99 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.99, TRUE 0.01 NA count: 0
Session Information
## Generated by: jonasalexandersteiner## Generated on: 2026-01-29 10:28:36## Dataset dimensions: 100 rows x 186 columns## [1] "gridExtra" "GGally" "skimr" "openxlsx" "deeplr" "kableExtra" "knitr" "broom" "DT" "janitor" "writexl" "readxl" "haven" "lubridate"
## [15] "forcats" "stringr" "purrr" "readr" "tidyr" "tibble" "tidyverse" "scales" "ggplot2" "dplyr" "pacman"